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Creators/Authors contains: "Houston, Lilianna"

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  1. Intrinsically disordered proteins and regions (IDPs) are involved in vital biological processes. To understand the IDP function, often controlled by conformation, we need to find the link between sequence and conformation. We decode this link by integrating theory, simulation, and machine learning (ML) where sequence-dependent electrostatics is modeled analytically while nonelectrostatic interaction is extracted from simulations for many sequences and subsequently trained using ML. The resulting Hamiltonian, combining physics-based electrostatics and machine-learned nonelectrostatics, accurately predicts sequence-specific global and local measures of conformations beyond the original observable used from the simulation. This is in contrast to traditional ML approaches that train and predict a specific observable, not a Hamiltonian. Our formalism reproduces experimental measurements, predicts multiple conformational features directly from sequence with high throughput that will give insights into IDP design and evolution, and illustrates the broad utility of using physics-based ML to train unknown parts of a Hamiltonian, rather than a specific observable, in combination with known physics. 
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    Free, publicly-accessible full text available November 6, 2025
  2. Abstract We present new Spitzer Infrared Array Camera (IRAC) 3.6 and 4.5 μ m mosaics of three fields, E-COSMOS, DEEP2-F3, and ELAIS-N1. Our mosaics include both new IRAC observations as well as reprocessed archival data in these fields. These fields are part of the HSC-Deep grizy survey and have a wealth of additional ancillary data. The addition of these new IRAC mosaics is critical in allowing for improved photometric redshifts and stellar population parameters at cosmic noon and earlier epochs. The total area mapped by this work is ∼17 deg 2 with a mean integration time of ≈1200s, providing a median 5 σ depth of 23.7(23.3) at 3.6(4.5) μ m in AB. We perform SExtractor photometry both on the combined mosaics as well as the single-epoch mosaics taken ≈6 months apart. The resultant IRAC number counts show good agreement with previous studies. In combination with the wealth of existing and upcoming spectrophotometric data in these fields, our IRAC mosaics will enable a wide range of galactic evolution and AGN studies. With that goal in mind, we make the combined IRAC mosaics and coverage maps of these three fields publicly available. 
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